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- 1.ppcseq::countscounts
- 2.tidybulk::tximeta_summarizeToGene_objectNeeded for tests tximeta_summarizeToGene_object, It is SummarizedExperiment from tximeta
- 3.tidybulk::vignette_manuscript_signature_boxplotNeeded for vignette vignette_manuscript_signature_boxplot
- 4.tidybulk::vignette_manuscript_signature_tsneNeeded for vignette vignette_manuscript_signature_tsne
- 5.tidybulk::vignette_manuscript_signature_tsne2Needed for vignette vignette_manuscript_signature_tsne2
- 6.tidybulk::X_cibersortCibersort reference
- 7.tidygate::demo_gate_dataDemo gate data
- 8.tidygate::gate_listExample gate_list
- 9.tidygate::tidygate_dataExample data set
- 10.tidyHeatmap::N52Example data set N52
- 11.tidyHeatmap::pasillaExample data set Pasilla
- 12.tidyprint::se_airwayExample SummarizedExperiment dataset
- 13.tidyseurat::cell_type_dfCell types of 80 PBMC single cells
- 14.tidyseurat::pbmc_small_nested_interactionsIntercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster.
- 15.tidySingleCellExperiment::cell_type_dfCell types of 80 PBMC single cells
- 16.tidySingleCellExperiment::pbmc_smallpbmc_small
- 17.tidySingleCellExperiment::pbmc_small_nested_interactionsIntercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster.
- 18.tidySummarizedExperiment::pasillaRead counts of RNA-seq samples of Pasilla knock-down by Brooks et al.
- 19.tidySummarizedExperiment::seRead counts of RNA-seq samples derived from Pasilla knock-down by Brooks et al.