1. ppcseq::counts
    counts
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|394821 x 9
  2. sccomp::counts_obj
    counts_obj
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|720 x 5
  3. sccomp::glm_dirichlet_multinomial
    glm_dirichlet_multinomial
    json| rda| rds
    character
  4. sccomp::glm_dirichlet_multinomial_generate_quantities
    glm_dirichlet_multinomial_generate_quantities
    json| rda| rds
    character
  5. sccomp::glm_dirichlet_multinomial_imputation
    glm_dirichlet_multinomial_imputation
    json| rda| rds
    character
  6. sccomp::glm_multi_beta
    glm_multi_beta
    json| rda| rds
    character
  7. sccomp::glm_multi_beta_generate_data
    glm_multi_beta_generate_data
    json| rda| rds
    character
  8. sccomp::multipanel_theme
    multipanel_theme
    rda| rds
    theme
  9. sccomp::sce_obj
    sce_obj
    rda| rds
    SingleCellExperiment
  10. sccomp::seurat_obj
    seurat_obj
    rda| rds
    Seurat
  11. tidybulk::X_cibersort
    Cibersort reference
    csv| xlsx| json| ndjson| rda| rds
    data.frame|547 x 22
  12. tidybulk::breast_tcga_mini_SE
    Needed for vignette breast_tcga_mini_SE
    rda| rds
    SummarizedExperiment
  13. tidybulk::counts_ensembl
    Counts with ensembl annotation
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|119 x 6
  14. tidybulk::ensembl_symbol_mapping
    Data set
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|291249 x 3
  15. tidybulk::flybaseIDs
    flybaseIDs
    json| rda| rds
    character
  16. tidybulk::se
    SummarizedExperiment
    rda| rds
    RangedSummarizedExperiment
  17. tidybulk::se_mini
    SummarizedExperiment mini for vignette
    rda| rds
    SummarizedExperiment
  18. tidybulk::tximeta_summarizeToGene_object
    Needed for tests tximeta_summarizeToGene_object, It is SummarizedExperiment from tximeta
    rda| rds
    RangedSummarizedExperiment
  19. tidybulk::vignette_manuscript_signature_boxplot
    Needed for vignette vignette_manuscript_signature_boxplot
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|899 x 12
  20. tidybulk::vignette_manuscript_signature_tsne
    Needed for vignette vignette_manuscript_signature_tsne
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|283 x 10
  21. tidybulk::vignette_manuscript_signature_tsne2
    Needed for vignette vignette_manuscript_signature_tsne2
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|283 x 9
  22. tidygate::demo_gate_data
    Demo gate data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|26 x 3
  23. tidygate::gate_list
    Example gate_list
    csv| json| rda| rds
    list
  24. tidygate::tidygate_data
    Example data set
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|2240 x 8
  25. tidyHeatmap::N52
    Example data set N52
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|520 x 15
  26. tidyHeatmap::pasilla
    Example data set Pasilla
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|504 x 8
  27. tidyseurat::cell_type_df
    Cell types of 80 PBMC single cells
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|80 x 2
  28. tidyseurat::pbmc_small_nested_interactions
    Intercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|100 x 9
  29. tidySingleCellExperiment::cell_type_df
    Cell types of 80 PBMC single cells
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|80 x 2
  30. tidySingleCellExperiment::pbmc_small
    pbmc_small
    rda| rds
    SingleCellExperiment
  31. tidySingleCellExperiment::pbmc_small_nested_interactions
    Intercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|100 x 9
  32. tidySummarizedExperiment::pasilla
    Read counts of RNA-seq samples of Pasilla knock-down by Brooks et al.
    rda| rds
    SummarizedExperiment
  33. tidySummarizedExperiment::se
    Read counts of RNA-seq samples derived from Pasilla knock-down by Brooks et al.
    rda| rds
    RangedSummarizedExperiment