Package: tidygate 1.0.14

tidygate: Interactively Gate Points

Interactively gate points on a scatter plot. Interactively drawn gates are recorded and can be applied programmatically to reproduce results exactly. Programmatic gating is based on the package gatepoints by Wajid Jawaid (who is also an author of this package).

Authors:Stefano Mangiola [aut, cre], Wajid Jawaid [ctb], William Hutchison [aut]

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tidygate/json (API)

# Install 'tidygate' in R:

install.packages('tidygate', repos = c('https://stemangiola.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stemangiola/tidygate/issues

Datasets:

demo_gate_data - Demo gate data

On CRAN:

assaydomain infrastructure clustering datavis dataviz dplyr drawing facs gate ggplot2 interactive pipe programmatic seurat single-cell single-cell-rna-seq tibble tidy-data tidyverse

6.89 score 23 stars 1 packages 14 scripts 292 downloads 6 exports 78 dependencies

Last updated 5 months agofrom:0950f40d85. Checks:5 OK, 3 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Feb 13 2025
R-4.5-win	NOTE	Feb 13 2025
R-4.5-mac	NOTE	Feb 13 2025
R-4.5-linux	NOTE	Feb 13 2025
R-4.4-win	OK	Feb 13 2025
R-4.4-mac	OK	Feb 13 2025
R-4.3-win	OK	Feb 13 2025
R-4.3-mac	OK	Feb 13 2025

Exports:fhs gate gate_chr gate_int server ui

Dependencies:askpass base64enc bslib cachem cli colorspace commonmark cpp11 crayon crosstalk curl data.table digest dplyr evaluate fansi farver fastmap fontawesome fs generics ggplot2 glue gridExtra gtable highr htmltools htmlwidgets httpuv httr isoband jquerylib jsonlite knitr labeling later lattice lazyeval lifecycle magrittr MASS Matrix memoise mgcv mime munsell nlme openssl pillar pkgconfig plotly promises purrr R6 rappdirs RColorBrewer Rcpp rlang rmarkdown sass scales shiny sourcetools stringi stringr sys tibble tidyr tidyselect tinytex utf8 vctrs viridis viridisLite withr xfun xtable yaml

tidygate: high-level data analysis and manipulation in tidyverse style

Rendered fromintrodution.Rmdusingknitr::knitron Feb 13 2025.

Last update: 2024-07-05
Started: 2020-06-26

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Demo gate data	demo_gate_data
Freehand select	fhs
Gate points	gate
Label points within a scatter plot drawing a gate	gate_chr gate_int
gate_chr	gate_chr.numeric
gate_int	gate_int.numeric
Interactively gate data with a simple scatter plot	gate_interactive
Programmatically gate data with pre-recorded lasso selection coordinates	gate_programmatic
Run Shiny App for interactive gating	server
Create Shiny App UI	ui